diff --git a/Code/Tools/SceneAPI/SceneData/Behaviors/ScriptProcessorRuleBehavior.cpp b/Code/Tools/SceneAPI/SceneData/Behaviors/ScriptProcessorRuleBehavior.cpp
index 2bec5a10c7..8924f10115 100644
--- a/Code/Tools/SceneAPI/SceneData/Behaviors/ScriptProcessorRuleBehavior.cpp
+++ b/Code/Tools/SceneAPI/SceneData/Behaviors/ScriptProcessorRuleBehavior.cpp
@@ -305,6 +305,11 @@ namespace AZ::SceneAPI::Behaviors
     {
         using namespace AzToolsFramework;
 
+        // This behavior persists on the same AssetBuilder. Clear the script file name so that if
+        // this builder processes a scene file with a script file name, and then later processes
+        // a scene without a script file name, it won't run the old script on the new scene.
+        m_scriptFilename.clear();
+
         if (action != ManifestAction::Update)
         {
             return Events::ProcessingResult::Ignored;
diff --git a/Gems/SceneProcessing/Code/Source/SceneBuilder/SceneBuilderWorker.cpp b/Gems/SceneProcessing/Code/Source/SceneBuilder/SceneBuilderWorker.cpp
index f43f1c7965..18ee0285b8 100644
--- a/Gems/SceneProcessing/Code/Source/SceneBuilder/SceneBuilderWorker.cpp
+++ b/Gems/SceneProcessing/Code/Source/SceneBuilder/SceneBuilderWorker.cpp
@@ -74,6 +74,8 @@ namespace SceneBuilder
             {
                 m_cachedFingerprint.append(element);
             }
+            // A general catch all version fingerprint. Update this to force all FBX files to recompile.
+            m_cachedFingerprint.append("Version 1");
         }
 
         return m_cachedFingerprint.c_str();