diff --git a/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/PrefabInstantiateBenchmarks.cpp b/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/PrefabInstantiateBenchmarks.cpp
index 5713b226b2..19180431a2 100644
--- a/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/PrefabInstantiateBenchmarks.cpp
+++ b/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/PrefabInstantiateBenchmarks.cpp
@@ -41,6 +41,10 @@ namespace Benchmark
             {
                 newInstances[instanceCounter] = m_prefabSystemComponent->InstantiatePrefab(templateToInstantiateId);
             }
+            
+            state.PauseTiming();
+            ResetPrefabSystem();
+            state.ResumeTiming();
         }
 
         state.SetComplexityN(numInstances);
diff --git a/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/SpawnableCreateBenchmarks.cpp b/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/SpawnableCreateBenchmarks.cpp
index 8e4c2eaad7..fdecde3732 100644
--- a/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/SpawnableCreateBenchmarks.cpp
+++ b/Code/Framework/AzToolsFramework/Tests/Prefab/Benchmark/SpawnableCreateBenchmarks.cpp
@@ -36,7 +36,8 @@ namespace Benchmark
 
             AzFramework::Spawnable spawnable;
             AzToolsFramework::Prefab::SpawnableUtils::CreateSpawnable(spawnable, prefabDom);
-
+            
+            ResetPrefabSystem();
             state.ResumeTiming();
         }